Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20022991

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20022991
Fusion NameHPV-ENSG00000268873 integration
ValidatedNo
Curated WayCurated
MethodHPV capture sequencing
Wet AssayYes
Sample IDG151224R43001.2
Sample NameNew sample
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameCervical cancer
Disease AbbreviationCC
CancerYes
Literature
PubMed ID35968887
JournalClinical and Translational Medicine
Published Year2022
Human Genome
Human Genome Version DescriptionGRCh38/hg38
Human Genome RefSeq AccessionGCF_000001405.40
Human Chromosomechr18
Cytogenetic Bandq12.1
Human Strand+
Human Integration Location Typeintronic
Hg19 Start-
Hg19 End-
Hg38 Start34751145
Hg38 End34751145
Junction SequenceAAGGAAGATCCATTAAATAAATATACTTTTTGGGAGGTTAACTTAAAGGAAAAGtTTTCTGCaGATCTAGATCAGTTTCCTAATATGGGAGAGAAAAAGCTGAGGTCCTCTCATCTGCCATTCTCTGTGTGGTCTGGTAGTCACCAAGTCC
Target Gene
Target GeneENSG00000268873, DTNA
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV58
Virus Genome AccessionD90400
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 58 complete genome
Virus Genome Length7824 bp
Virus Breakpoint17028
Virus Breakpoint2-
Virus Gene NameL1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-