| Basic Information ▶ | |
| VISDB ID | TVIS20023541 |
|---|---|
| Fusion Name | HPV-TAF1B integration |
| Validated | No |
| Curated Way | Curated |
| Method | HPV capture sequencing |
| Wet Assay | Yes |
| Sample ID | G160718R53201.9 |
| Sample Name | New sample |
| Sample Type | Tumor |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Cervical cancer |
| Disease Abbreviation | CC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 35968887 |
| Journal | Clinical and Translational Medicine |
| Published Year | 2022 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh38/hg38 |
| Human Genome RefSeq Accession | GCF_000001405.40 |
| Human Chromosome | chr2 |
| Cytogenetic Band | p25.1 |
| Human Strand | + |
| Human Integration Location Type | intronic |
| Hg19 Start | - |
| Hg19 End | - |
| Hg38 Start | 9888669 |
| Hg38 End | 9888669 |
| Junction Sequence | CTGCCTAATTTCTGATGTCAATCTGCTATAATTCTTATCTTTACTGTTTTTATGCTATTTTCGCACATAATATTTTGTATGCTTTTTAGCGTTCTATTACTATTTTCCTCATTGTCCTCTATACTAGTACAACTTAC |
| Target Gene ▶ | |
| Target Gene | TAF1B |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV52 |
| Virus Genome Accession | X74481 |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | Human papillomavirus type 52 genomic DNA |
| Virus Genome Length | 7,942 bp |
| Virus Breakpoint1 | 1466 |
| Virus Breakpoint2 | - |
| Virus Gene Name | E1 |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
| Predicted VIS Effect ▶ | |
| Gene Id | ENSG00000115750.18 |
| Gene Name | TAF1B |
| Region | intron |
| Impact | intronic_insertion |
| Transcript | Transcript 1: ENST00000944452.1, Transcript 2: ENST00000263663.10, Transcript 3: ENST00000434858.5, Transcript 4: ENST00000492648.2 |
| SpliceAI Score | |
| Delta Scores | Acceptor Gain: 0.000 | Acceptor Loss: 0.000 | Donor Gain: 0.000 | Donor Loss: 0.000 |
| Delta Score Max | 0.000 |
| Delta Position at Max | 1140 |
| Delta Score Flag | LOW |
| Gene | TAF1B |
| AlphaGenome Analysis | |
| Window | chr2:9823133-9954205 |
| RNA-seq Change (±2kb) | Mean: -7.086469850037247e-05 | Peak: 0.0751953125 |
| ATAC Change (±2kb) | Mean: -0.000531592988409102 | Peak: 7.45684814453125 |
| Interpretation | RNA-seq: no signal in region (REF≈0, ALT≈0) | Splice sites: no signal in region (REF≈0, ALT≈0) | ATAC: minimal change -1.8% |
| Visualization | |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D