| Basic Information ▶ | |
| VISDB ID | TVIS20024198 |
|---|---|
| Fusion Name | HPV-NRXN1-DT integration |
| Validated | No |
| Curated Way | Curated |
| Method | EBV capture sequencing, followed by Viral Integration Pathway Analysis (VIPA) pipeline |
| Wet Assay | No |
| Sample ID | SRR4003636.6 |
| Sample Name | SRA315538 |
| Sample Type | Tumor |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Cervical cancer |
| Disease Abbreviation | CC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 35968887 |
| Journal | Clinical and Translational Medicine |
| Published Year | 2022 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh38/hg38 |
| Human Genome RefSeq Accession | GCF_000001405.40 |
| Human Chromosome | chr2 |
| Cytogenetic Band | p16.3 |
| Human Strand | + |
| Human Integration Location Type | intronic |
| Hg19 Start | - |
| Hg19 End | - |
| Hg38 Start | 51046418 |
| Hg38 End | 51046418 |
| Junction Sequence | ntgtaccttctggatcagccATTGTTGCTTACTGCTGGGATGCACACCACGGACACACAAAGGACAGGGTGTTATGATTTATTTTTGTCACTAGCCATTTTATAAGAATATATGTAAGCtgcacttaattggggatgtgaatta |
| Target Gene ▶ | |
| Target Gene | NRXN1-DT, NRXN1 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV18 |
| Virus Genome Accession | X05015 |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | Human papillomavirus type 18 E6, E7, E1, E2, E4, E5, L1 & L2 genes |
| Virus Genome Length | 7,857 bp |
| Virus Breakpoint1 | 863 |
| Virus Breakpoint2 | - |
| Virus Gene Name | E7 |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D