Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20024354

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20024354
Fusion NameHPV-RERE integration
ValidatedNo
Curated WayCurated
MethodEBV capture sequencing, followed by Viral Integration Pathway Analysis (VIPA) pipeline
Wet AssayNo
Sample IDSRR4003727.1
Sample NameSRA315538
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameCervical cancer
Disease AbbreviationCC
CancerYes
Literature
PubMed ID35968887
JournalClinical and Translational Medicine
Published Year2022
Human Genome
Human Genome Version DescriptionGRCh38/hg38
Human Genome RefSeq AccessionGCF_000001405.40
Human Chromosomechr1
Cytogenetic Bandp36.23
Human Strand.
Human Integration Location Typeintronic
Hg19 Start-
Hg19 End-
Hg38 Start8491763
Hg38 End8491763
Junction Sequence-
Target Gene
Target GeneRERE
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV33
Virus Genome AccessionM12732
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 33, complete genome
Virus Genome Length7909 bp
Virus Breakpoint14238
Virus Breakpoint2-
Virus Gene NameL2
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-