Basic Information ▼ | |
VISDB ID | TVIS20025190 |
---|---|
Fusion Name | HPV-KIAA0825 integration |
Validated | No |
Curated Way | Curated |
Method | EBV capture sequencing, followed by Viral Integration Pathway Analysis (VIPA) pipeline |
Wet Assay | No |
Sample ID | SRR1611110.9 |
Sample Name | SRA189003 |
Sample Type | Tumor |
Age | - |
Gender | - |
Disease Information ▼ | |
Disease Name | Cervical cancer |
Disease Abbreviation | CC |
Cancer | Yes |
Literature ▼ | |
PubMed ID | 35968887 |
Journal | Clinical and Translational Medicine |
Published Year | 2022 |
Human Genome ▼ | |
Human Genome Version Description | GRCh38/hg38 |
Human Genome RefSeq Accession | GCF_000001405.40 |
Human Chromosome | chr5 |
Cytogenetic Band | q15 |
Human Strand | + |
Human Integration Location Type | intronic |
Hg19 Start | - |
Hg19 End | - |
Hg38 Start | 94569478 |
Hg38 End | 94569478 |
Junction Sequence | gTACACACGCAGTGGACAACATATAGGTGCCCGCATACATTATTTTCAGGACTACAACCACGACCAATGATATGAAAAACCATCGTTGTATTTCAACTACAAGAACACCAATGACCCCAATACGCA |
Target Gene ▼ | |
Target Gene | KIAA0825 |
Nearby Gene | - |
Distance | - |
Virus Information ▼ | |
Virus Name | Human Papillomavirus |
Virus Subtype Name | HPV11 |
Virus Genome Accession | M14119 |
TaxonomyID | 10566 |
Virus Abbreviation | HPV |
Virus Genome | Human papillomavirus type 11 (HPV-11) complete genome |
Virus Genome Length | 7,931 bp |
Virus Breakpoint1 | 5379 |
Virus Breakpoint2 | - |
Virus Gene Name | L2 |
Virus Region Type | - |
Integrated Virus Sequence | - |
ViMIC ID | - |