Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20025450

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20025450
Fusion NameHPV-chr10:75080513 integration
ValidatedNo
Curated WayCurated
MethodViral capture sequencing (VCS) and whole genome sequencing, followed by analysis using FuseSV
Wet AssayYes
Sample ID-
Sample NameT046
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameSmall cell cervical carcinoma
Disease AbbreviationSCCC
CancerYes
Literature
PubMed ID36216793
JournalNature Communications
Published Year2022
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr10
Cytogenetic Bandq22.2
Human Strand+
Human Integration Location Typeintergenic
Hg19 Start76840271
Hg19 End76840271
Hg38 Start75080513
Hg38 End75080513
Junction Sequence-
Target Gene
Target Gene-
Nearby GeneDUSP29
Distance6871
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV18
Virus Genome AccessionNC_001357.1
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus - 18, complete genome
Virus Genome Length7857 bp
Virus Breakpoint15017
Virus Breakpoint2-
Virus Gene NameL2
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-