Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20025496

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20025496
Fusion NameHPV-chr10:99315515 integration
ValidatedNo
Curated WayCurated
MethodViral capture sequencing (VCS) and whole genome sequencing, followed by analysis using FuseSV
Wet AssayYes
Sample ID-
Sample NameT212
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameSmall cell cervical carcinoma
Disease AbbreviationSCCC
CancerYes
Literature
PubMed ID36216793
JournalNature Communications
Published Year2022
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr10
Cytogenetic Bandq24.2
Human Strand+
Human Integration Location Typeintergenic
Hg19 Start101075272
Hg19 End101075272
Hg38 Start99315515
Hg38 End99315515
Junction Sequence-
Target Gene
Target Gene-
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionNC_001526.4
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16, complete genome
Virus Genome Length7906 bp
Virus Breakpoint18282(376)
Virus Breakpoint2-
Virus Gene NameE1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-