Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20026894

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20026894
Fusion NameHPV-ENSG00000283462 integration
ValidatedNo
Curated WayCurated
MethodViral capture sequencing (VCS) and whole genome sequencing, followed by analysis using FuseSV
Wet AssayYes
Sample ID-
Sample NameT171
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameSmall cell cervical carcinoma
Disease AbbreviationSCCC
CancerYes
Literature
PubMed ID36216793
JournalNature Communications
Published Year2022
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr5
Cytogenetic Bandq21.2
Human Strand+
Human Integration Location Typeexonic
Hg19 Start103220270
Hg19 End103220270
Hg38 Start103884569
Hg38 End103884569
Junction Sequence-
Target Gene
Target GeneENSG00000283462, ENSG00000297797
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionNC_001526.4
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16, complete genome
Virus Genome Length7906 bp
Virus Breakpoint18392(487)
Virus Breakpoint2-
Virus Gene NameE1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-