Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20027866

Basic Information ▶
VISDB ID	TVIS20027866
Fusion Name	HPV-CLK1 integration
Validated	No
Curated Way	Curated
Method	Virus capture sequencing
Wet Assay	Yes
Sample ID	-
Sample Name	MOCC-0001
Sample Type	Tumor
Age	48
Gender	Female
Disease Information ▶
Disease Name	Cervical cancer
Disease Abbreviation	CC
Cancer	Yes
Literature ▶
PubMed ID	36777180
Journal	Cell Genomics
Published Year	2023
Human Genome ▶
Human Genome Version Description	GRCh38/hg38
Human Genome RefSeq Accession	GCF_000001405.40
Human Chromosome	chr2
Cytogenetic Band	q33.1
Human Strand	-
Human Integration Location Type	intronic
Hg19 Start	-
Hg19 End	-
Hg38 Start	200859164
Hg38 End	200859164
Junction Sequence	GTGGTTCTCAGCCTTGGTTTTATGTTAAGATCCTCCTCGAGAGGTTTGCCTACCCCAGACCTTTTCAGGGTAGTTACCTAGGAATCTATATTTTTAGGAAGTGCTGTAATTCATTCTGATAACATAGCTGGAGATAACTTGGTGTCCCAAGTTTAATTATGTATGTTTATCAAACTACTGATTGAAATTTTTTTTTTTCTCGAGACAGAGTCTCGCTC \| CAGTATAAAAACACTATTACAACAATATTGTTTATATTTACACATTCAAAGTTTAGCATGTTCATGGGGAATGGTTGTGTTACTATTAGTAAGATATAAATGTGGAAAAAATAGAGAAACAATTGAAAAATTGCTGTCTAAACTATTATGTGTGTCTCCAATGTGTATGATGATAGAGCCTCCAAAATTGCGTAGTACAGCAGCAGCATTATATTGGTATAAAACAGGTATGTCAAATATTAGTGAAGTGTATGGAGACACGCCAGAATGGATACAAAGACAAACAGTATTACAACATAGTTTTAATGATTGTACATTTGAATTATC
Target Gene ▶
Target Gene	CLK1
Nearby Gene	-
Distance	-
Virus Information ▶
Virus Name	Human Papillomavirus
Virus Subtype Name	HPV16
Virus Genome Accession	-
TaxonomyID	10566
Virus Abbreviation	HPV
Virus Genome	-
Virus Genome Length	-
Virus Breakpoint1	1609
Virus Breakpoint2	-
Virus Gene Name	-
Virus Region Type	-
Integrated Virus Sequence	-
ViMIC ID	-