| Basic Information ▶ | |
| VISDB ID | TVIS20028126 |
|---|---|
| Fusion Name | HPV-LINC01088 integration |
| Validated | No |
| Curated Way | Curated |
| Method | Virus capture sequencing |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | MOCC-001Q |
| Sample Type | Tumor |
| Age | 56 |
| Gender | Female |
| Disease Information ▶ | |
| Disease Name | Cervical cancer |
| Disease Abbreviation | CC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 36777180 |
| Journal | Cell Genomics |
| Published Year | 2023 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh38/hg38 |
| Human Genome RefSeq Accession | GCF_000001405.40 |
| Human Chromosome | chr4 |
| Cytogenetic Band | q21.21 |
| Human Strand | + |
| Human Integration Location Type | intronic |
| Hg19 Start | - |
| Hg19 End | - |
| Hg38 Start | 79142492 |
| Hg38 End | 79142492 |
| Junction Sequence | CATGGATATACAGTGGAAGTGCAGTTTGATGGAGACATATGCAATACAATGCATTATACAAACTGGAAACATATATATATTTGTGAAGAAGCATCAGTAACTGTGGTAGAGGGTCAAGTTGACTATTATGGTTTATATTATGTTCATGAAGGAATACGAACATATTTTGTGCAGTTTAAAGATGATGCAGAAAAATATAGTAAAAATAAAGTATGGGAAGTTCATGCGGGTGGTCAGGTAATATTATGTCCTACATCTGTGTTTAGCAGCAACGAAGTATCCTCTCCTGAAACTATTAGGCAGCACTTGGCCAACCACTCCGCCGCGACCCATACCAAAGCCGTCGCCTTGGGCACCGAAGAAACACAGACGACTAT | TATGTTTACATTACACTACATTCTATTAAGTGTGCAATAGCATTATGTCCATAAAAACAATCTACATATCTTAATTAAAATCATTTATTGCTAAAAAATGCTAGTGGTCATCTGAGCCTTTGGTGAATTGTAATATTTTTGCTGATGGAGGATTTTGCCTCAATTTTGATAATTGTAGACTGATGACGGTAGTTGTTACTGAAGGCTGGAGTGGCTGTGGCAATTTCTTAAAGTAAGACTACAGTGGACTAGCACACAGCTTGTGGCTGCAATCCCAACTACTCTGGAGTCTGAGGCAGGATCTCTTAAGGGCAGGAGTTTGAGACCAATCTGGACAACATAGTGATACC |
| Target Gene ▶ | |
| Target Gene | LINC01088 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV16 |
| Virus Genome Accession | - |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | - |
| Virus Genome Length | - |
| Virus Breakpoint1 | 3467 |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
| Predicted VIS Effect ▶ | |
| Gene Id | ENSG00000249307.9 |
| Gene Name | LINC01088 |
| Region | intron |
| Impact | intronic_insertion |
| Transcript | Transcript 1: ENST00000509088.7, Transcript 2: ENST00000671503.1, Transcript 3: ENST00000658852.1, Transcript 4: ENST00000833402.1, Transcript 5: ENST00000651041.1, Transcript 6: ENST00000510667.5, Transcript 7: ENST00000513153.5 |
| AlphaGenome Analysis | |
| Chromosome | chr4 |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D