| Basic Information ▶ | |
| VISDB ID | TVIS20029023 |
|---|---|
| Fusion Name | HPV-CCDC30 integration |
| Validated | No |
| Curated Way | Curated |
| Method | HPV-capture sequencing |
| Wet Assay | Yes |
| Sample ID | 78 |
| Sample Name | - |
| Sample Type | Tumor |
| Age | <40 = 4; 40-49 = 19; >50 = 27 |
| Gender | Female |
| Disease Information ▶ | |
| Disease Name | Cervial Cancer |
| Disease Abbreviation | CC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 37212325 |
| Journal | Journal of Medical Virology |
| Published Year | 2023 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh38/hg38 |
| Human Genome RefSeq Accession | GCF_000001405.40 |
| Human Chromosome | chr1 |
| Cytogenetic Band | p34.2 |
| Human Strand | |
| Human Integration Location Type | intronic |
| Hg19 Start | - |
| Hg19 End | - |
| Hg38 Start | 42608722 |
| Hg38 End | 42608722 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | CCDC30, ENSG00000285728 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | Muliple |
| Virus Genome Accession | HPV6: FR751337.1, HPV82: AF293961.1, HPV69: AB027020.1, HPV68: FR751039.1, HPV66: EF177191.1, HPV59: EU918767.1, HPV58: HQ537777.1, HPV56: EF177181.1, HPV52: HQ537751.1, HPV45: EF202167.1, HPV39: M62849.1, HPV35: HQ537730.1, HPV33: HQ537688.1, HPV31: HQ537687.1, HPV18: AY262282.1, HPV16: NC_001526.2, HPV11: HE574705.1 |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | - |
| Virus Genome Length | - |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D