| Basic Information ▶ | |
| VISDB ID | TVIS20030622 |
|---|---|
| Fusion Name | HPV -MBD2 integration |
| Validated | No |
| Curated Way | Curated |
| Method | DNA extraction and HPV hybridization capture sequencing |
| Wet Assay | Yes |
| Sample ID | 79 |
| Sample Name | - |
| Sample Type | Tumor |
| Age | 70 |
| Gender | Male |
| Disease Information ▶ | |
| Disease Name | Squamous cell carcinoma |
| Disease Abbreviation | SCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 37244055 |
| Journal | Virology |
| Published Year | 2023 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh38/hg38 |
| Human Genome RefSeq Accession | GCF_000001405.40 |
| Human Chromosome | chr18 |
| Cytogenetic Band | q21.2 |
| Human Strand | |
| Human Integration Location Type | intronic |
| Hg19 Start | - |
| Hg19 End | - |
| Hg38 Start | -54158177 |
| Hg38 End | -54158177 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | MBD2 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV58 |
| Virus Genome Accession | HQ537777.1 |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | Human papillomavirus type 58 isolate Z094, complete genome |
| Virus Genome Length | 7820 bp |
| Virus Breakpoint1 | -4322 |
| Virus Breakpoint2 | - |
| Virus Gene Name | L2 |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D