| Basic Information ▶ | |
| VISDB ID | TVIS20030676 |
|---|---|
| Fusion Name | HPV-CHD5 integration |
| Validated | No |
| Curated Way | Curated |
| Method | Bioinformatic analysis using Polyidus pipeline |
| Wet Assay | No |
| Sample ID | - |
| Sample Name | TCGA-C5-A1BK-01B-11R-A13Y-07 |
| Sample Type | TCGA-CESC |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | HPV+ tumor |
| Disease Abbreviation | - |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 37365652 |
| Journal | Genome Biology |
| Published Year | 2023 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh38/hg38 |
| Human Genome RefSeq Accession | GCF_000001405.40 |
| Human Chromosome | chr1 |
| Cytogenetic Band | p36.31 |
| Human Strand | + |
| Human Integration Location Type | intronic |
| Hg19 Start | - |
| Hg19 End | - |
| Hg38 Start | 6109617 |
| Hg38 End | 6109618 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | CHD5 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV16 |
| Virus Genome Accession | - |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | - |
| Virus Genome Length | - |
| Virus Breakpoint1 | 880 |
| Virus Breakpoint2 | 881 |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D