Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20031263

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20031263
Fusion NameHPV-DNMBP integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS106
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr10
Cytogenetic Bandq24.2
Human Strand+
Human Integration Location Typeintronic
Hg19 Start101657728
Hg19 End101657728
Hg38 Start99897971
Hg38 End99897971
Junction SequenceAACCCAGCTGTAATCATGCATGGAGATACACCTACATTGCATGAATATATGTTAGATTTGCAACCAGAGACAACTGATCTCTACTGTTATGAGCAATTAAATGACAGCTCAGAGGAGGAAGATGAAATAGATGTCCAATCCGTAGTCAGAGACCTTTTAGTACTAGTCTGAAGGAAGAGCCAAAAATATTCATTGATC
Target Gene
Target GeneDNMBP
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF125673
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 isolate 16W12E, complete genome
Virus Genome Length7904 bp
Virus Breakpoint1678
Virus Breakpoint2-
Virus Gene NameHpV16gp2_E7
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-