Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20031491

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20031491
Fusion NameHPV-ENSG00000304402 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS106
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr18
Cytogenetic Bandq12.1
Human Strand-
Human Integration Location Typeintronic
Hg19 Start27411347
Hg19 End27411347
Hg38 Start29831382
Hg38 End29831382
Junction SequenceACATATATTATCATGCAGGAACATCCAGACTACTTGCAGTTGGACATCCCTATTTTCCTATTAAAAAACCTAACAATAACAAAATATTAGTTCCTAAAGTATCAGGATTACAATACAGGGTATTTAGAATACATTTACACCTTCCAGCATTAGCTAATCACTTTATTTTTTTTTTCAGAGTTTTGACACTGCT
Target Gene
Target GeneENSG00000304402
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF125673
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 isolate 16W12E, complete genome
Virus Genome Length7904 bp
Virus Breakpoint15867
Virus Breakpoint2-
Virus Gene NameHpV16gp8_L1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-