Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20031568

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20031568
Fusion NameHPV-KIAA1217 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS106
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr10
Cytogenetic Bandp12.1
Human Strand+
Human Integration Location Typeintronic
Hg19 Start24764571
Hg19 End24764571
Hg38 Start24475642
Hg38 End24475642
Junction SequenceGTAGAGTCACACTTGCAACAAAAGGTTACAATATTGTAATGGGCTCTGTCCGGTTCTGCTTGTCCAGCTGGTCAAATTTTAAAGCTCCAAAAAATGATCTCCTTTGACTCCAGGTCACGCTGATGTAAGAGGTGGGTTCCC
Target Gene
Target GeneKIAA1217
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF125673
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 isolate 16W12E, complete genome
Virus Genome Length7904 bp
Virus Breakpoint1681
Virus Breakpoint2-
Virus Gene NameHpV16gp2_E7
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-