Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20031720

Genomic Region Visualization (IGV)

Basic Information ▶
VISDB IDTVIS20031720
Fusion NameHPV-FYN integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS106
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information ▶
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature ▶
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome ▶
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr6
Cytogenetic Bandq21
Human Strand+
Human Integration Location Typeintronic
Hg19 Start112061979
Hg19 End112061979
Hg38 Start111740776
Hg38 End111740776
Junction SequenceACAAATGAGTATGAGTCAATGGATAAAATATAGATGTGATAGGGTAGATGATGGAGGTGATTGGAAGCAAATTACTATCAGAAGTTTGGTTATGAGCCATGGAATGAGAGCCTACCTTTGGAGTCAGGCTGAATGTGTAGAGCACTCAAGCTTGATAG
Target Gene ▶
Target GeneFYN
Nearby Gene-
Distance-
Virus Information ▶
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF125673
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 isolate 16W12E, complete genome
Virus Genome Length7904 bp
Virus Breakpoint12185
Virus Breakpoint2-
Virus Gene NameHpV16gp3_E1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-
Predicted VIS Effect ▶
Gene IdENSG00000010810.19
Gene NameFYN
Regionintron
Impactintronic_insertion
TranscriptTranscript 1: ENST00000912315.1, Transcript 2: ENST00000912314.1, Transcript 3: ENST00000354650.7, Transcript 4: ENST00000368682.8, Transcript 5: ENST00000912317.1, Transcript 6: ENST00000905536.1, Transcript 7: ENST00000912316.1, Transcript 8: ENST00000966561.1, Transcript 9: ENST00000905531.1, Transcript 10: ENST00000905547.1, Transcript 11: ENST00000905535.1, Transcript 12: ENST00000966576.1, Transcript 13: ENST00000966562.1, Transcript 14: ENST00000966564.1, Transcript 15: ENST00000966572.1, Transcript 16: ENST00000229471.8, Transcript 17: ENST00000905548.1, Transcript 18: ENST00000905542.1, Transcript 19: ENST00000368667.6, Transcript 20: ENST00000905537.1, Transcript 21: ENST00000912325.1, Transcript 22: ENST00000912322.1, Transcript 23: ENST00000966565.1, Transcript 24: ENST00000912319.1, Transcript 25: ENST00000912320.1, Transcript 26: ENST00000912321.1, Transcript 27: ENST00000912324.1, Transcript 28: ENST00000966566.1, Transcript 29: ENST00000966563.1, Transcript 30: ENST00000905544.1, Transcript 31: ENST00000905543.1, Transcript 32: ENST00000905540.1, Transcript 33: ENST00000905532.1, Transcript 34: ENST00000912327.1, Transcript 35: ENST00000912326.1, Transcript 36: ENST00000966574.1, Transcript 37: ENST00000368678.8, Transcript 38: ENST00000966567.1, Transcript 39: ENST00000912318.1, Transcript 40: ENST00000905541.1, Transcript 41: ENST00000966573.1, Transcript 42: ENST00000905538.1, Transcript 43: ENST00000966575.1, Transcript 44: ENST00000966571.1, Transcript 45: ENST00000966568.1, Transcript 46: ENST00000966569.1, Transcript 47: ENST00000905545.1, Transcript 48: ENST00000966570.1, Transcript 49: ENST00000905546.1, Transcript 50: ENST00000905550.1, Transcript 51: ENST00000966577.1, Transcript 52: ENST00000905534.1, Transcript 53: ENST00000912323.1, Transcript 54: ENST00000905539.1, Transcript 55: ENST00000905530.1, Transcript 56: ENST00000905549.1, Transcript 57: ENST00000905533.1, Transcript 58: ENST00000523322.5, Transcript 59: ENST00000462856.6, Transcript 60: ENST00000520518.5, Transcript 61: ENST00000517419.5, Transcript 62: ENST00000518295.5, Transcript 63: ENST00000523238.5, Transcript 64: ENST00000524310.5, Transcript 65: ENST00000523574.5, Transcript 66: ENST00000518630.5, Transcript 67: ENST00000523570.5, Transcript 68: ENST00000484067.6, Transcript 69: ENST00000521062.5, Transcript 70: ENST00000462598.7, Transcript 71: ENST00000521361.5, Transcript 72: ENST00000487824.2
SpliceAI Score
Delta ScoresAcceptor Gain: 0.000 | Acceptor Loss: 0.090 | Donor Gain: 0.020 | Donor Loss: 0.150
Delta Score Max0.150
Delta Position at Max205
Delta Score FlagLOW
GeneFYN
AlphaGenome Analysis
Chromosomechr6
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