Basic Information ▼ | |
VISDB ID | TVIS20031728 |
---|---|
Fusion Name | HPV-AADACL2-AS1 integration |
Validated | No |
Curated Way | Curated |
Method | High-throughput Viral Integration Detection method |
Wet Assay | Yes |
Sample ID | - |
Sample Name | S106 |
Sample Type | Tumor |
Age | 57 = 59; >57 = 50 |
Gender | - |
Disease Information ▼ | |
Disease Name | Oropharyngeal squamous cell carcinoma |
Disease Abbreviation | OPSCC |
Cancer | Yes |
Literature ▼ | |
PubMed ID | 38279874 |
Journal | Clinical and Translational Medicine |
Published Year | 2024 |
Human Genome ▼ | |
Human Genome Version Description | GRCh37/hg19 |
Human Genome RefSeq Accession | GCF_000001405.13 |
Human Chromosome | chr3 |
Cytogenetic Band | q25.1 |
Human Strand | + |
Human Integration Location Type | intronic |
Hg19 Start | 151499857 |
Hg19 End | 151499857 |
Hg38 Start | 151782069 |
Hg38 End | 151782069 |
Junction Sequence | AATCTTGATACTGCATCCACAACATTACTGGCGTGCTTTTTGCTTTGCTTTTGTGTGCTTTTGTGTGTCTGCCATGTTACATGTAAAAGCAAATTATCATCAATTTATAATTTAATGATGAGCGACTTGGTGTTTTAGATT |
Target Gene ▼ | |
Target Gene | AADACL2-AS1, AADACP1, AADACP1 |
Nearby Gene | - |
Distance | - |
Virus Information ▼ | |
Virus Name | Human Papillomavirus |
Virus Subtype Name | HPV16 |
Virus Genome Accession | AF125673 |
TaxonomyID | 10566 |
Virus Abbreviation | HPV |
Virus Genome | Human papillomavirus type 16 isolate 16W12E, complete genome |
Virus Genome Length | 7904 bp |
Virus Breakpoint1 | 3927 |
Virus Breakpoint2 | - |
Virus Gene Name | HpV16gp6_E5 |
Virus Region Type | - |
Integrated Virus Sequence | - |
ViMIC ID | - |