Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20031883

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20031883
Fusion NameHPV-ENSG00000309396 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS106
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr9
Cytogenetic Bandq33.2
Human Strand+
Human Integration Location Typeintronic
Hg19 Start122875627
Hg19 End122875627
Hg38 Start120113349
Hg38 End120113349
Junction SequenceAGCAGAAAAAAAACAAATGAGTATGAGTCAATGGATAAAATATAGATGTGATAGGGTAGATGATGGAGGAAGCTGGTTAGTATGAAGTGTCAGGGGAATTACCCTGAAAAAGCGAAGGATGAGCTAGACAAAGGAAAGGTC
Target Gene
Target GeneENSG00000309396
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF125673
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 isolate 16W12E, complete genome
Virus Genome Length7904 bp
Virus Breakpoint12173
Virus Breakpoint2-
Virus Gene NameHpV16gp3_E1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-