Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20032073

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20032073
Fusion NameHPV-PATJ integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS106
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr1
Cytogenetic Bandp31.3
Human Strand+
Human Integration Location Typeintronic
Hg19 Start62209446
Hg19 End62209446
Hg38 Start61743774
Hg38 End61743774
Junction SequenceCCTTTCTAAAAAGTAATTCACAGGCAAAAATTGTAAAGGATTGTGCAACAATGTGTAGACATTATAAACGAGCAGACAATTGATTAAAATAGGTAATTACTGAGGATCAATCACATACACAGCAGTAAGTGTTCAGGGATC
Target Gene
Target GenePATJ
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF125673
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 isolate 16W12E, complete genome
Virus Genome Length7904 bp
Virus Breakpoint12110
Virus Breakpoint2-
Virus Gene NameHpV16gp3_E1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-