Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20032108

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20032108
Fusion NameHPV-chr13:57383629 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS106
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr13
Cytogenetic Bandq21.1
Human Strand+
Human Integration Location Typeintergenic
Hg19 Start57957763
Hg19 End57957763
Hg38 Start57383629
Hg38 End57383629
Junction SequenceATTCAGGATGGTGATATGGTTGATACTGGCTTTGGTGCTATGGACTTTACTACATTACAGGCTAACATATTTAGATATATATTTTCAACTCAATTCATAGTGTGATGGTTTAAAAGCCTGGATACTATCATTAAATTGATT
Target Gene
Target Gene-
Nearby GeneRPL31P53
Distance7542
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF125673
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 isolate 16W12E, complete genome
Virus Genome Length7904 bp
Virus Breakpoint16284
Virus Breakpoint2-
Virus Gene NameHpV16gp8_L1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-