Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20032710

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20032710
Fusion NameHPV-ENSG00000236212 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS103
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr7
Cytogenetic Bandp14.3
Human Strand-
Human Integration Location Typeintronic
Hg19 Start34330230
Hg19 End34330230
Hg38 Start34290618
Hg38 End34290618
Junction SequenceGGACGAGGACAAGGAAAACGATGGAGACTCTTTGCCAACGTTTAAATGTGTGTCAGGACAAAATACTAACACATTATGAAAATGATAGTACAGACCTACGTGACCATATAGACTATTGGAAACACATGCGCCTAGAATAGATGGCACATCATTTTAACATTCTTATTCCCTTCCTCCACTCTCCTTTCTTCTTACAAAACACT
Target Gene
Target GeneENSG00000236212, NPSR1-AS1
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF125673
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 isolate 16W12E, complete genome
Virus Genome Length7904 bp
Virus Breakpoint12872
Virus Breakpoint2-
Virus Gene NameHpV16gp4_E2
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-