Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20032945

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20032945
Fusion NameHPV-CDH20 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS005
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr18
Cytogenetic Bandq21.33
Human Strand-
Human Integration Location Typeintronic
Hg19 Start59017470
Hg19 End59017470
Hg38 Start61350237
Hg38 End61350237
Junction SequenceACGAGGACAAGGAAAACGATGGAGACTCTTTGCCAACGTTTAAATGTGTGTCAGGACAAAATACTAACACATTATGAAAATGATAGTACAAACCTACAAATGAGAGGATACACAGCACACATATGGAACAAGGGGAATTTGAGAAAGGGAAAGGAAGAGATGAAGAAAGATGAAAGGAAATGAATTTTTTAAATGAAGGAA
Target Gene
Target GeneCDH20
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint12833
Virus Breakpoint2-
Virus Gene NameHpV16gp4_E2
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-