Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20033276

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20033276
Fusion NameHPV-TENM2-AS1 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS013
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr5
Cytogenetic Bandq34
Human Strand+
Human Integration Location Typeintronic
Hg19 Start167662079
Hg19 End167662079
Hg38 Start168235074
Hg38 End168235074
Junction SequenceGCAGATGTTACAGGTAGAAGGGCGCCATGAGACTGAAACACCATGTAGTCAGTATAGTGGTGGAAGTGGGGGTGGTTTTCCGCAAAGGAAATTAAGGTGCAGCCACCAAAAGAAGCTGATGCTTGGCAGACAAAATCAACA
Target Gene
Target GeneTENM2-AS1, TENM2
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint11365
Virus Breakpoint2-
Virus Gene NameHpV16gp3_E1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-