Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20033375

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20033375
Fusion NameHPV-HELZ integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS020
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr17
Cytogenetic Bandq24.2
Human Strand+
Human Integration Location Typeintronic
Hg19 Start65205386
Hg19 End65205386
Hg38 Start67209270
Hg38 End67209270
Junction SequenceAGTGGACATTACAAGACGTTAGCCTTGAAGTGTATTTAACTGCACCAACAGGATGTATAAAAAAACATGGATATTGGTTATGTGATACAGGTTATGTGATATAGACCATCTGATATAGTTTATATGAGATAGATTATAAAC
Target Gene
Target GeneHELZ
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint13099
Virus Breakpoint2-
Virus Gene NameHpV16gp4_E2
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-