Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20034259

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20034259
Fusion NameHPV-PPP1R12B integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS043
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr1
Cytogenetic Bandq32.1
Human Strand+
Human Integration Location Typeintronic
Hg19 Start202366446
Hg19 End202366446
Hg38 Start202397318
Hg38 End202397318
Junction SequenceTAAGGAAAAGTTTTCTGCAGACCTAGATCAGTTTCCTTTAGGACGCAAATTTTTACTACAAGCAGGATTAAAGGCCGGCGGAGGTTGCAGTGAGCCAAGAACGCACCACTGCACTCCAGCCTGGGAGACAGAGCGAGACTCCA
Target Gene
Target GenePPP1R12B
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint17064
Virus Breakpoint2-
Virus Gene NameHpV16gp8_L1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-