Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20034277

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20034277
Fusion NameHPV-HTR1D integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS044
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr1
Cytogenetic Bandp36.12
Human Strand+
Human Integration Location Typeintronic
Hg19 Start23527465
Hg19 End23527465
Hg38 Start23200972
Hg38 End23200972
Junction SequenceATGAGTATGAGTCAATGGATAAAATAGAGATGTGATAGGGTAGATGATGGAGGTGATTGGAAGCAAATTGTTATGTTTTTAAGGTATCAAGGTGTAGAGTTTATGGAGAAGAGTACAGCTCCTTCCTCAGGCAGCTGCAGAAGTGCAGAGGGTCAGAGATCACCAGGCACAACCCCCTTACGGGCACCACGGTGAGGAAACTGGGACTTGGGGAAGAGGAATTGACT
Target Gene
Target GeneHTR1D
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint12219
Virus Breakpoint2-
Virus Gene NameHpV16gp3_E1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-