Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20034373

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20034373
Fusion NameHPV-LINC03076 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS047
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr7
Cytogenetic Bandq31.1
Human Strand+
Human Integration Location Typeintronic
Hg19 Start112526890
Hg19 End112526890
Hg38 Start112886835
Hg38 End112886835
Junction SequenceATTTGGGCATCAGAGGTAACCATAGAACCATATGGCGACAGCTTATTTTTTTATTTACGAAGGGAACAAATGTTTGTTACAACAAGAGCTCAGATTAGCCATAGCTGTGTGTGTGGCCAGGTGGGAGACATGGTAACTGT
Target Gene
Target GeneLINC03076, BMT2
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint16408
Virus Breakpoint2-
Virus Gene NameHpV16gp8_L1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-