Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20034422

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20034422
Fusion NameHPV-STEAP1B integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS048
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr7
Cytogenetic Bandp15.3
Human Strand-
Human Integration Location Typeintronic
Hg19 Start22645517
Hg19 End22645517
Hg38 Start22605898
Hg38 End22605898
Junction SequenceAATGGATGGTTTTATGTAGAGGCTGTAGTGGAAAAAAAAACAGGGGATGCTATATCAGATGACGAGAACGAAAATGACAGCTCCAGAAAAGCTGACCTTCAGAAATGAAGGAGAGATAAAGACTTTCCCAGATAAACAAAAG
Target Gene
Target GeneSTEAP1B
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint1988
Virus Breakpoint2-
Virus Gene NameHpV16gp3_E1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-