Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20034815

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20034815
Fusion NameHPV-LINGO2 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS064
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr9
Cytogenetic Bandp21.1
Human Strand+
Human Integration Location Typeintronic
Hg19 Start28535892
Hg19 End28535892
Hg38 Start28535894
Hg38 End28535894
Junction SequenceCTCTACTGTTATGAGCAATTAAGTGACAGCTCAGAGGAGGAGGATGAAATAGATGGTCCAGCTGGACAAGCAGAACCGGACAGAGCCCATTACAATATTGTAACCTTTTGTTGCAAGTGTGACTCTACGCTTCGTGTGTGCTTTGTACGCACAACCGAAGCGTAGATTTGTAATGCTCTTGGAGATGAGACATGACCTTTGGCCTAAGC
Target Gene
Target GeneLINGO2
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint1757
Virus Breakpoint2-
Virus Gene NameHpV16gp2_E7
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-