Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20034960

Genomic Region Visualization (IGV)

Basic Information ▶
VISDB IDTVIS20034960
Fusion NameHPV-ENSG00000302195 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS065
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information ▶
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature ▶
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome ▶
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr7
Cytogenetic Bandq32.1
Human Strand+
Human Integration Location Typeintronic
Hg19 Start128094276
Hg19 End128094276
Hg38 Start128454222
Hg38 End128454222
Junction SequenceAGGCAGCACTTGGCCAACCACTCCGCCGCGACCCATACCAAAGCCGTCGCCTTGGGCACCAAAGAAACACAGACGACTATCCAGCGACCAAGATCAGTCACCAGGCAGGAAGGCGCTACCGCAGCTTGTCTGGTTTTGACC
Target Gene ▶
Target GeneENSG00000302195
Nearby Gene-
Distance-
Virus Information ▶
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint13484
Virus Breakpoint2-
Virus Gene NameHpV16gp4_E2;HpV16gp5_E4
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-
Predicted VIS Effect ▶
TranscriptTranscript 1: ENST00000784862.1, Transcript 2: ENST00000784863.1, Transcript 3: ENST00000784864.1, Transcript 4: ENST00000784865.1, Transcript 5: ENST00000784867.1, Transcript 6: ENST00000784866.1, Transcript 7: ENST00000784872.1, Transcript 8: ENST00000784871.1, Transcript 9: ENST00000784870.1, Transcript 10: ENST00000784869.1, Transcript 11: ENST00000784868.1, Transcript 12: ENST00000784877.1, Transcript 13: ENST00000784876.1, Transcript 14: ENST00000784875.1, Transcript 15: ENST00000784874.1, Transcript 16: ENST00000784873.1, Transcript 17: ENST00000784878.1, Transcript 18: ENST00000784879.1, Transcript 19: ENST00000784880.1, Transcript 20: ENST00000784881.1, Transcript 21: ENST00000784883.1, Transcript 22: ENST00000784882.1, Transcript 23: ENST00000916177.1, Transcript 24: ENST00000435296.2, Transcript 25: ENST00000916178.1, Transcript 26: ENST00000257696.5, Transcript 27: ENST00000481454.1, Transcript 28: ENST00000462662.1, Transcript 29: ENST00000493710.1
Transcript 1 Gene IdENSG00000302195.1
Transcript 1 Gene NameENSG00000302195
Transcript 1 Regionintron
Transcript 1 Impactintronic_insertion
Transcript 2 Gene IdENSG00000302195.1
Transcript 2 Gene NameENSG00000302195
Transcript 2 Regionintron
Transcript 2 Impactintronic_insertion
Transcript 3 Gene IdENSG00000302195.1
Transcript 3 Gene NameENSG00000302195
Transcript 3 Regionintron
Transcript 3 Impactintronic_insertion
Transcript 4 Gene IdENSG00000302195.1
Transcript 4 Gene NameENSG00000302195
Transcript 4 Regionintron
Transcript 4 Impactintronic_insertion
Transcript 5 Gene IdENSG00000302195.1
Transcript 5 Gene NameENSG00000302195
Transcript 5 Regionintron
Transcript 5 Impactintronic_insertion
Transcript 6 Gene IdENSG00000302195.1
Transcript 6 Gene NameENSG00000302195
Transcript 6 Regionintron
Transcript 6 Impactintronic_insertion
Transcript 7 Gene IdENSG00000302195.1
Transcript 7 Gene NameENSG00000302195
Transcript 7 Regionintron
Transcript 7 Impactintronic_insertion
Transcript 8 Gene IdENSG00000302195.1
Transcript 8 Gene NameENSG00000302195
Transcript 8 Regionintron
Transcript 8 Impactintronic_insertion
Transcript 9 Gene IdENSG00000302195.1
Transcript 9 Gene NameENSG00000302195
Transcript 9 Regionintron
Transcript 9 Impactintronic_insertion
Transcript 10 Gene IdENSG00000302195.1
Transcript 10 Gene NameENSG00000302195
Transcript 10 Regionintron
Transcript 10 Impactintronic_insertion
Transcript 11 Gene IdENSG00000302195.1
Transcript 11 Gene NameENSG00000302195
Transcript 11 Regionintron
Transcript 11 Impactintronic_insertion
Transcript 12 Gene IdENSG00000302195.1
Transcript 12 Gene NameENSG00000302195
Transcript 12 Regionintron
Transcript 12 Impactintronic_insertion
Transcript 13 Gene IdENSG00000302195.1
Transcript 13 Gene NameENSG00000302195
Transcript 13 Regionintron
Transcript 13 Impactintronic_insertion
Transcript 14 Gene IdENSG00000302195.1
Transcript 14 Gene NameENSG00000302195
Transcript 14 Regionintron
Transcript 14 Impactintronic_insertion
Transcript 15 Gene IdENSG00000302195.1
Transcript 15 Gene NameENSG00000302195
Transcript 15 Regionintron
Transcript 15 Impactintronic_insertion
Transcript 16 Gene IdENSG00000302195.1
Transcript 16 Gene NameENSG00000302195
Transcript 16 Regionintron
Transcript 16 Impactintronic_insertion
Transcript 17 Gene IdENSG00000302195.1
Transcript 17 Gene NameENSG00000302195
Transcript 17 Regionintron
Transcript 17 Impactintronic_insertion
Transcript 18 Gene IdENSG00000302195.1
Transcript 18 Gene NameENSG00000302195
Transcript 18 Regionintron
Transcript 18 Impactintronic_insertion
Transcript 19 Gene IdENSG00000302195.1
Transcript 19 Gene NameENSG00000302195
Transcript 19 Regionintron
Transcript 19 Impactintronic_insertion
Transcript 20 Gene IdENSG00000302195.1
Transcript 20 Gene NameENSG00000302195
Transcript 20 Regionintron
Transcript 20 Impactintronic_insertion
Transcript 21 Gene IdENSG00000302195.1
Transcript 21 Gene NameENSG00000302195
Transcript 21 Regionintron
Transcript 21 Impactintronic_insertion
Transcript 22 Gene IdENSG00000302195.1
Transcript 22 Gene NameENSG00000302195
Transcript 22 Regionintron
Transcript 22 Impactintronic_insertion
Transcript 23 Gene IdENSG00000135245.11
Transcript 23 Gene NameHILPDA
Transcript 23 Regionpromoter
Transcript 23 Impactpromoter_insertion
Transcript 24 Gene IdENSG00000135245.11
Transcript 24 Gene NameHILPDA
Transcript 24 Regionpromoter
Transcript 24 Impactpromoter_insertion
Transcript 25 Gene IdENSG00000135245.11
Transcript 25 Gene NameHILPDA
Transcript 25 Regionpromoter
Transcript 25 Impactpromoter_insertion
Transcript 26 Gene IdENSG00000135245.11
Transcript 26 Gene NameHILPDA
Transcript 26 Regionpromoter
Transcript 26 Impactpromoter_insertion
Transcript 27 Gene IdENSG00000135245.11
Transcript 27 Gene NameHILPDA
Transcript 27 Regionpromoter
Transcript 27 Impactpromoter_insertion
Transcript 28 Gene IdENSG00000273184.1
Transcript 28 Gene NameENSG00000273184
Transcript 28 Regionpromoter
Transcript 28 Impactpromoter_insertion
Transcript 29 Gene IdENSG00000240758.3
Transcript 29 Gene NameHILPDA-AS1
Transcript 29 Regionpromoter
Transcript 29 Impactpromoter_insertion
AlphaGenome Analysis
Windowchr7:128388686-128519758
RNA-seq Change (±2kb)Mean: -0.0031090921256691217 | Peak: 6.9600830078125
ATAC Change (±2kb)Mean: -0.020430563017725945 | Peak: 137.99285888671875
InterpretationRNA-seq: DECREASED 10.7% (REF=0.03, ALT=0.03) | Splice sites: no signal in region (REF≈0, ALT≈0) | ATAC: minimal change -5.7%
Visualization
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Email: Zhongming Zhao, Ph.D

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