Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20035142

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20035142
Fusion NameHPV-chr21:20604630 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS069
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr21
Cytogenetic Bandq21.1
Human Strand+
Human Integration Location Typeintergenic
Hg19 Start21976943
Hg19 End21976943
Hg38 Start20604630
Hg38 End20604630
Junction SequenceTTAGCATCACCTTTTAAATGTACTATGGGTGTAGTGTTACTATTACAGTTAATCCGTCCTTTGTGTGAGCTGTTAAATGCAGTGAGGATTGGAGCACTGTCCACTGGGTCTCTGTGCAGCAACTTAGTGGTGTGAACTCTATAGCAAACTGGTAGTAAGACATGAAATTTAGCACAAAAAGTGGGCCATTTAAACAACTACTCAGAATGGCTTTGTATTAAAAAGTTGGTGCAAAAGTG
Target Gene
Target Gene-
Nearby GeneENSG00000276738
Distance6467
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint13508
Virus Breakpoint2-
Virus Gene NameHpV16gp4_E2;HpV16gp5_E4
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-