Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20035710

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20035710
Fusion NameHPV-ADGB integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS093
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr6
Cytogenetic Bandq24.3
Human Strand+
Human Integration Location Typeintronic
Hg19 Start147025024
Hg19 End147025024
Hg38 Start146703888
Hg38 End146703888
Junction SequenceAAGAGAACTGCAATGTTTCAGGACCCACAGGAGCGACCCAGAAAGTTACCACAGTTATGCACAGAGCTGCAAACCTATAAAAGAAATAATAATAACACTGAGAGAACACTCCTATAAGCAACAGTGGATACCAGAAGAGAC
Target Gene
Target GeneADGB
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint1164
Virus Breakpoint2-
Virus Gene NameHpV16gp1_E6
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-