Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20037498

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20037498
Fusion NameHPV-SLC8A1 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS094
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr2
Cytogenetic Bandp22.1
Human Strand+
Human Integration Location Typeintronic
Hg19 Start40356156
Hg19 End40356156
Hg38 Start40129016
Hg38 End40129016
Junction SequenceTATATTCCATTGGGAACAAGGCCTCCCACAGCTACAGATACACTTGCTCCTGTAAGACCCCCTTTAACAGTTCCTTCCACAGATATCAAACATTACCCTTATATTCCTACATGCCTGCCTCCCTCCTTGAGGGTATATAGC
Target Gene
Target GeneSLC8A1, SLC8A1-AS1
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint14518
Virus Breakpoint2-
Virus Gene NameHpV16gp7_L2
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-