Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20037665

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20037665
Fusion NameHPV-EXOC6B integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS096
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr2
Cytogenetic Bandp13.2
Human Strand+
Human Integration Location Typeintronic
Hg19 Start72463488
Hg19 End72463488
Hg38 Start72236359
Hg38 End72236359
Junction SequenceTTTTCGTCAAATGGAAACTCATTAGGAAATGTAAACACCACCAATCTATTATGTAGACAAGGGCAACAGACTGAGAATCTTAAAACCAGGCAGAGACTAACTACTAGGGGGCGAAAAAAACTTGGAATCTTTGCTGCTTCC
Target Gene
Target GeneEXOC6B
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint12602
Virus Breakpoint2-
Virus Gene NameHpV16gp3_E1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-