Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20039340

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20039340
Fusion NameHPV-NTM integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS092
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr11
Cytogenetic Bandq25
Human Strand-
Human Integration Location Typeintronic
Hg19 Start131957865
Hg19 End131957865
Hg38 Start132087971
Hg38 End132087971
Junction SequenceCCAAAGAAACACAGACGACTATCCAGCGACCAAGATCAGAGCCAGACACCGGAAACCCCTGCCACACCACTAAGTTGCTGCACAGAGACTCAGTGGACAGTGCTCCAATCCTCACTGCATTTAACAGCTCACACACCACCACCTATTCATCCATCTATCTCGACTTTCCTTCGAAAAATTCCCT
Target Gene
Target GeneNTM
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint13580
Virus Breakpoint2-
Virus Gene NameHpV16gp4_E2;HpV16gp5_E4
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-