Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20040053

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20040053
Fusion NameHPV-CHL1 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS092
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr3
Cytogenetic Bandp26.3
Human Strand-
Human Integration Location Typeintronic
Hg19 Start272332
Hg19 End272332
Hg38 Start230649
Hg38 End230649
Junction SequenceACTATTGGAAACACATGCGCCTAGAATGTGCTATTTATTACAAGGCCAGAGAAATGGGATTTAAACATATTAACCACCAGGTGGTGCCAACACTGGCTGTATCAAAGAATAAAGCATTACAAGCAATTGAACTGCAAAGTATACCATAATGACAGGAATACAAAAAACACAAAATTATGAATTGGAA
Target Gene
Target GeneCHL1
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint12982
Virus Breakpoint2-
Virus Gene NameHpV16gp4_E2
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-