Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20040961

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20040961
Fusion NameHPV-NEDD4L integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS101
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr18
Cytogenetic Bandq21.31
Human Strand+
Human Integration Location Typeintronic
Hg19 Start55959607
Hg19 End55959607
Hg38 Start58292375
Hg38 End58292375
Junction SequenceCTACCATGGCTGATCCTGCAGGTACCAATGGGGAAGAGGGTACGGGATGTAATGGATGGTTTTATGTAGAGGCAAGAAGGAAATAGGGGAATATAGGCAATTTTGAGAGGTAGCACATGATTTTCAGGGGAATTGAGT
Target Gene
Target GeneNEDD4L
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint1931
Virus Breakpoint2-
Virus Gene NameHpV16gp3_E1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-