Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20041072

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20041072
Fusion NameHPV-DLEU2 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS104
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr13
Cytogenetic Bandq14.2
Human Strand-
Human Integration Location Typeintronic
Hg19 Start50661245
Hg19 End50661245
Hg38 Start50087109
Hg38 End50087109
Junction SequenceAGGCAAAAATTGTAAAGGATTGTGCAACAATGTGTAGACATTATAAACGAGCAGAAAAAAAACAAATGAGTATGAGTCAATAGAAAAGATGAACAGGTCTGACATTTATATAATTGGAGTCCCAGAAGTAGGAAAAAAAAAAGAAT
Target Gene
Target GeneDLEU2, DLEU1
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint12136
Virus Breakpoint2-
Virus Gene NameHpV16gp3_E1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-