Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20041694

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20041694
Fusion NameHPV-ENSG00000226465 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS105
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr20
Cytogenetic Bandp11.1
Human Strand+
Human Integration Location Typeintronic
Hg19 Start25736378
Hg19 End25736378
Hg38 Start25755742
Hg38 End25755742
Junction SequenceGTGTCTACATACACATCATTAATACTATTGGTATTACTATTGTGGATAACAGCAGCCTCTGCGTTTAGGTGTTTTATTTTTAATTTTTTGATGACTAATCATGCTGTTTTCCATAATGGCTTTACCAAGTTACATTCCCAGTGA
Target Gene
Target GeneENSG00000226465
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint14029
Virus Breakpoint2-
Virus Gene NameHpV16gp6_E5
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-