Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20042086

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20042086
Fusion NameHPV-ENSG00000304989 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS107
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr5
Cytogenetic Bandq32
Human Strand+
Human Integration Location Typeintronic
Hg19 Start146099220
Hg19 End146099220
Hg38 Start146719657
Hg38 End146719657
Junction SequenceATCTACCTCTACAACTGCTAAACGCAAAAAACGTAAGCTGTAAGTATTGTATGTATGTTGACTCAGTGTGGTAATTATTCTGTTTTGTGCTTCTCTTTCAGCAAGCCTCATTAAGATTTTGCACCTGTTTTCTGATGT
Target Gene
Target GeneENSG00000304989, PPP2R2B
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint17180
Virus Breakpoint2-
Virus Gene NameHpV16gp8_L1//downstream
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-