Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20042166

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20042166
Fusion NameHPV-ENSG00000253642 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS107
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr8
Cytogenetic Bandp12
Human Strand+
Human Integration Location Typeintronic
Hg19 Start33737240
Hg19 End33737240
Hg38 Start33879722
Hg38 End33879722
Junction SequenceAGGCAGACACACAAAAGCACACAAAAGCAAAGCAAAAAGCACGCCAGTAATGTTGTGGATGCAGTATCAAGAGGGAGGGGTGCCTGCTGGTTCCTACCAGAGGAAGTGATTGGCTTGTTTAAAGAATTTGGTGGGCTT
Target Gene
Target GeneENSG00000253642
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint13860
Virus Breakpoint2-
Virus Gene NameHpV16gp6_E5
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-