Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20042172

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20042172
Fusion NameHPV-EPB41L3 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS107
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr18
Cytogenetic Bandp11.31
Human Strand+
Human Integration Location Typeexonic
Hg19 Start5630382
Hg19 End5630382
Hg38 Start5630383
Hg38 End5630383
Junction SequenceATTGGTGGTGTTTACATTTCCTAATGAGTTTCCATTTGACGAAAACGGAAATCCAGTGTATGAGCTTAATGATAAGAACTGGAAATCCTTTTTCTCAAGGACGTGGTCCAGATTAAGTTTGCACGAGGACGAGGACACCGAAGCCTTCCTTTGGGGCCCCTCCCGGAGCTTGTTCGCAGCCCGCAGGCACAACCTTCCTTGGAGAAAAAAAGTAGCGCAAGGGCAGAGAGAGGTAGGGCTGCTCACAGGTCCCTCCGCAGGGGCTCTTT
Target Gene
Target GeneEPB41L3
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint12745
Virus Breakpoint2-
Virus Gene NameHpV16gp3_E1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-