Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20043092

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20043092
Fusion NameHPV-NEGR1 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS108
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr1
Cytogenetic Bandp31.1
Human Strand+
Human Integration Location Typeintronic
Hg19 Start72067662
Hg19 End72067662
Hg38 Start71601979
Hg38 End71601979
Junction SequenceCGTGCTTTTTGCTTTGCTTTTGTGTGCTTTTGTGTGTCTGCCTATTAATACGTCCGCTGCTTTTGTCTGTGATGCATAATAATATCAGGTTTGTGGATTTGAAGAGATTTAACATACTGGGGGAAAAAAATCTGCTCTTA
Target Gene
Target GeneNEGR1
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint13956
Virus Breakpoint2-
Virus Gene NameHpV16gp6_E5
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-