Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20043459

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20043459
Fusion NameHPV-ENSG00000294816 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS108
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr11
Cytogenetic Bandq14.2
Human Strand+
Human Integration Location Typeintronic
Hg19 Start87436927
Hg19 End87436927
Hg38 Start87726035
Hg38 End87726035
Junction SequenceACACTCATCCATTACATCCCGTACCCTCTTCCCCATTGGTACCTGCAGGATCAGCCATGGTAGATTATGGTTTCTGGGAAACAGTAGTGAACAGATCAGAGAGCCACAGCAACCCAGAGTGTGGATGTCGAACACTGCTGAGGGT
Target Gene
Target GeneENSG00000294816
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint1842
Virus Breakpoint2-
Virus Gene NameHpV16gp2_E7
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-