| Basic Information ▶ | |
| VISDB ID | TVIS20043694 |
|---|---|
| Fusion Name | HPV-ENSG00000285558 integration |
| Validated | No |
| Curated Way | Curated |
| Method | High-throughput Viral Integration Detection method |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | S108 |
| Sample Type | Tumor |
| Age | 57 = 59; >57 = 50 |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Oropharyngeal squamous cell carcinoma |
| Disease Abbreviation | OPSCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 38279874 |
| Journal | Clinical and Translational Medicine |
| Published Year | 2024 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr3 |
| Cytogenetic Band | q23 |
| Human Strand | + |
| Human Integration Location Type | exonic |
| Hg19 Start | 141499239 |
| Hg19 End | 141499239 |
| Hg38 Start | 141780397 |
| Hg38 End | 141780397 |
| Junction Sequence | CTACAAGCAGGATTAAAGGCCAAACCAAAATTTACATTAGGAAAACGAAAAGCTACACCCACCACCTCATCTACCTCTACAACTGCTAAACGCAAAAAACGTAAGCTGTAAGTATTGTATGTATGTTGACTCAGTGGTAGTTATGCGTTTACTTTGACTTTGTCTTGTCACTAGCCATTGTCTTACTTAT |
| Target Gene ▶ | |
| Target Gene | ENSG00000285558, GRK7 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV16 |
| Virus Genome Accession | AF534061 |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | Human papillomavirus type 16 East Asian type, complete genome |
| Virus Genome Length | 7905 bp |
| Virus Breakpoint1 | 7179 |
| Virus Breakpoint2 | - |
| Virus Gene Name | HpV16gp8_L1//downstream |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
| Predicted VIS Effect ▶ | |
| Region | CDS |
| Impact | stop_gained |
| Frameshift | True |
| Stop Gained | True |
| Transcript | Transcript 1: ENST00000648835.1, Transcript 2: ENST00000682958.1, Transcript 3: ENST00000264952.2 |
| Transcript 1 Gene Id | ENSG00000285558.1 |
| Transcript 1 Gene Name | ENSG00000285558 |
| Transcript 1 Protein Change From Aa0 | 19 |
| Transcript 2 Gene Id | ENSG00000114124.3 |
| Transcript 2 Gene Name | GRK7 |
| Transcript 2 Protein Change From Aa0 | 212 |
| Transcript 3 Gene Id | ENSG00000114124.3 |
| Transcript 3 Gene Name | GRK7 |
| Transcript 3 Protein Change From Aa0 | 212 |
| SpliceAI Score | |
| Delta Scores | Acceptor Gain: 0.880 | Acceptor Loss: 0.020 | Donor Gain: 0.680 | Donor Loss: 0.030 |
| Delta Score Max | 0.880 |
| Delta Position at Max | 0 |
| Delta Score Flag | HIGH_PRECISION |
| Gene | GRK7 |
| Altered Protein (FASTA) | |
| AlphaGenome Analysis | |
| Chromosome | chr3 |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D