Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20043725

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20043725
Fusion NameHPV-chr21:42622702 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS108
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr21
Cytogenetic Bandq22.3
Human Strand+
Human Integration Location Typeintergenic
Hg19 Start44042812
Hg19 End44042812
Hg38 Start42622702
Hg38 End42622702
Junction SequenceATTGTTGTATACCATAACTTACTATTTTTTCTTTTTTATTTTTATATATAATTTTTTGTTTGTTTGTGTGTTTACAACTTACAGTTTTTATGGAGTGAAATATGTCATTTACAGAATGGCTTCTGGGTAGTGTATCTTGC
Target Gene
Target Gene-
Nearby GeneLINC01671
Distance7608
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint14205
Virus Breakpoint2-
Virus Gene NameHpV16gp7_L2;HpV16gp4_E2;HpV16gp5_E4;HpV16gp6_E5//upstream;downstream
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-