Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20044254

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20044254
Fusion NameHPV-FAM9B integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS109
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human ChromosomechrX
Cytogenetic Bandp22.31
Human Strand+
Human Integration Location Typeintronic
Hg19 Start9157139
Hg19 End9157139
Hg38 Start9189098
Hg38 End9189098
Junction SequenceGAAAGTGTAAAATGCCCTCCAGTTTCTGCAGGTGTTGGAGGCTGCAATACAGATGGGTCAGTGAAAGTGGGATGGTTCAGAAAATGCACAGATAACAAGCAAATGGGGCAAAATGTTATCATTTGGCGAATTTGCTGA
Target Gene
Target GeneFAM9B
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint14713
Virus Breakpoint2-
Virus Gene NameHpV16gp7_L2
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-