Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20044888

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20044888
Fusion NameHPV-chr21:26821182 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS112
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr21
Cytogenetic Bandq21.3
Human Strand+
Human Integration Location Typeintergenic
Hg19 Start28193501
Hg19 End28193501
Hg38 Start26821182
Hg38 End26821182
Junction SequenceCCAAAGAAACACAGACGACTATCCAGCGACCAAGATCAGAGCCAGACACCGGAAACCCCTGCCACACAGAAGATAGTGAGTCAGCTCATCCACCCAGTACAGAGCTACAACAAGTAGAATTTGAGGAAGCCCTGAGGCAA
Target Gene
Target Gene-
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint13512
Virus Breakpoint2-
Virus Gene NameHpV16gp4_E2;HpV16gp5_E4
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-