Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20047338

Genomic Region Visualization (IGV)

Basic Information ▶
VISDB IDTVIS20047338
Fusion NameHPV-DCAF6 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameS093
Sample TypeTumor
Age57 = 59; >57 = 50
Gender-
Disease Information ▶
Disease NameOropharyngeal squamous cell carcinoma
Disease AbbreviationOPSCC
CancerYes
Literature ▶
PubMed ID38279874
JournalClinical and Translational Medicine
Published Year2024
Human Genome ▶
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr1
Cytogenetic Bandq24.2
Human Strand+
Human Integration Location Typeintronic
Hg19 Start167995275
Hg19 End167995275
Hg38 Start168026037
Hg38 End168026037
Junction SequenceGGTAAGTAAAGTTATAGTCAAACTGTGATTGTTACATAATGAAAGAGTTGGAAGTCCATAGACATTTTAAGTGGGCCAACTAGTTTTGATACCATGGAATACTTAGCCAAAAGATATTTATATAATCCATTATTAATAGAAGTAGGTGAGGCTGCATGTGAAGTGGTAGTATATGTAGAAGGTGTTATAGTT
Target Gene ▶
Target GeneDCAF6
Nearby Gene-
Distance-
Virus Information ▶
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint15332
Virus Breakpoint2-
Virus Gene NameHpV16gp7_L2
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-
Predicted VIS Effect ▶
Gene IdENSG00000143164.17
Gene NameDCAF6
Regionintron
Impactintronic_insertion
TranscriptTranscript 1: ENST00000432587.6, Transcript 2: ENST00000856040.1, Transcript 3: ENST00000856039.1, Transcript 4: ENST00000856041.1, Transcript 5: ENST00000943254.1, Transcript 6: ENST00000856043.1, Transcript 7: ENST00000943256.1, Transcript 8: ENST00000943255.1, Transcript 9: ENST00000856042.1, Transcript 10: ENST00000943257.1, Transcript 11: ENST00000943258.1, Transcript 12: ENST00000943259.1, Transcript 13: ENST00000943260.1, Transcript 14: ENST00000856044.1, Transcript 15: ENST00000367843.7, Transcript 16: ENST00000943261.1, Transcript 17: ENST00000856045.1, Transcript 18: ENST00000856048.1, Transcript 19: ENST00000856046.1, Transcript 20: ENST00000943265.1, Transcript 21: ENST00000856054.1, Transcript 22: ENST00000856049.1, Transcript 23: ENST00000856050.1, Transcript 24: ENST00000856047.1, Transcript 25: ENST00000943263.1, Transcript 26: ENST00000943266.1, Transcript 27: ENST00000856057.1, Transcript 28: ENST00000936293.1, Transcript 29: ENST00000856058.1, Transcript 30: ENST00000943269.1, Transcript 31: ENST00000856056.1, Transcript 32: ENST00000943267.1, Transcript 33: ENST00000367840.4, Transcript 34: ENST00000856055.1, Transcript 35: ENST00000856053.1, Transcript 36: ENST00000943264.1, Transcript 37: ENST00000856051.1, Transcript 38: ENST00000856052.1, Transcript 39: ENST00000943270.1, Transcript 40: ENST00000943268.1, Transcript 41: ENST00000943262.1, Transcript 42: ENST00000943271.1, Transcript 43: ENST00000856072.1, Transcript 44: ENST00000856059.1, Transcript 45: ENST00000856073.1, Transcript 46: ENST00000856067.1, Transcript 47: ENST00000856068.1, Transcript 48: ENST00000856066.1, Transcript 49: ENST00000856064.1, Transcript 50: ENST00000856062.1, Transcript 51: ENST00000856063.1, Transcript 52: ENST00000943274.1, Transcript 53: ENST00000943273.1, Transcript 54: ENST00000856060.1, Transcript 55: ENST00000943272.1, Transcript 56: ENST00000943278.1, Transcript 57: ENST00000856069.1, Transcript 58: ENST00000856070.1, Transcript 59: ENST00000856071.1, Transcript 60: ENST00000856065.1, Transcript 61: ENST00000856061.1, Transcript 62: ENST00000943277.1, Transcript 63: ENST00000312263.10, Transcript 64: ENST00000943276.1, Transcript 65: ENST00000943275.1
SpliceAI Score
Delta ScoresAcceptor Gain: 0.400 | Acceptor Loss: 0.000 | Donor Gain: 0.430 | Donor Loss: 0.000
Delta Score Max0.430
Delta Position at Max0
Delta Score FlagHIGH_RECALL
GeneDCAF6
AlphaGenome Analysis
Chromosomechr1
Related Links: VISDB1.0  |  UCSC  |  NCBI  |  Ensembl  |  OncoKB  |  ONGene  |  HumCFS  |  COSMIC  |  miRTarBase  |  NPInter  |  ATACdb  |  ENCODE  |  Cytoscape
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